PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G024300.1
Common NameB456_011G024300, LOC105776741
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 473aa    MW: 52578.4 Da    PI: 10.4135
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G024300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.7e-08841236
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                        grW t+E++ll  av ++G ++W+++a+++  +R+
  Gorai.011G024300.1  8 GRWGTWEELLLGGAVLRHGARDWNLVASELR-TRS 41
                        9******************************.998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.600.001459IPR009057Homeodomain-like
PfamPF002491.9E-6742IPR001005SANT/Myb domain
CDDcd001670.00124956No hitNo description
SuperFamilySSF473704.19E-18258370IPR001487Bromodomain
SMARTSM002979.9E-19262370IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.8E-16264371IPR001487Bromodomain
PfamPF004392.0E-13276354IPR001487Bromodomain
PROSITE profilePS5001410.277281351IPR001487Bromodomain
CDDcd043692.45E-15283361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGTDMVTGRW GTWEELLLGG AVLRHGARDW NLVASELRTR SISPFDFTPE VCKAKYEDLQ  60
QRYSGSTAWF EELRKQRMEE LRRALEKSED SIGSLESKLE SLKAEKRDDS RVGYDSSQTE  120
SVLPCVKSEG VEFSSKDTYK DGLSAGSFTQ EAETKWAPDC LVPVAVPAEE MDSKLGNSPT  180
SAEREKISTI DNLADALLGG QLRSIRKRRG KRKRKYCSPK EGSVGESEFL GTSDFASVSW  240
CKETSASNSA QIARSSGVED QSRDSSKDRI DEIMGIFSSV AENDCASVFR RRLDSQKRGR  300
YKKMILRHMD FDTIKSRIGS NSINSVRELF RDMLLVANNA LVFYSKNTRE YKSALLLRHI  360
VTASLRQHLK ECRTKIPITT FTPTRPIHKP PAKPRSIRPG NRKPPGNAAN NRNPVVGNSN  420
VSKKPTNASS PPSMESLVVT KKGSARPRKG GCAQASQKSE SPAKGRKRTR AR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464470GRKRTRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455065.10.0PREDICTED: uncharacterized protein LOC105776741 isoform X2
TrEMBLA0A0D2T1810.0A0A0D2T181_G
STRINGGLYMA15G07500.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.16e-34DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]